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2023.09.01
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2023 Te-Yao Hsu, Hsin-Hsin Cheng, Kuo-Chung Lan, Hsuan-Ning Hung, Yun-Ju Lai, Chih-Chang Tsai, Wen-Lang Fan & Sung-Chou Li. The abundances of LTF and SOD2 in amniotic fluid are potential biomarkers of gestational age and preterm birth.Sci Rep. 2023; 13: 4903.
Cheng-Tsung PanChien-Chu LinI-Jin LinKun-Yi ChienYeong-Shin Lin Is a corresponding authorHsiao-Han Chang Is a corresponding authorWen-Guey Wu. The evolution and structure of snake venom phosphodiesterase (svPDE) highlight its importance in venom actions.eLife. 2023; 12: e83966.
Ko‐Chao Lee, Hong‐Hwa Chen, Kung‐Chuan Cheng, Ting‐Ting Liu, Kam‐Fai Lee, Chih‐Chuan Teng, Cheng‐Yi Huang,  Meng‐Chiao Hsieh, and Hsing‐Chun Kuo. Use of iTRAQ-based quantitative proteomic identification of CHGA and UCHL1 correlated with lymph node metastasis in colorectal carcinoma. J Cell Mol Med. 2023 Jul;27(14):2004-2020.
Chiao-Yun Lin, Kai-Yun Wu, Lang-Ming Chi, Yun-Hsin Tang, Huei-Jean Huang, Chyong-Huey Lai, Chi-Neu Tsai, Chia-Lung Tsai. Starvation-inactivated MTOR triggers cell migration via a ULK1-SH3PXD2A/TKS5-MMP14 pathway in ovarian carcinoma. Published online: 28 Jul 2023 .Autophagy
 Anna Dudek, Chyi-Liang Chen, Chih-Hsien Chuang, Kun-Yi Chien, Ye Feng, Yuan-Ming Yeh,Yi-Hsin Wang, Hsin-Ju Chang,Yuan-Chuan Lee, and Cheng-Hsun Chiu. Marine prebiotics mediate decolonization of Pseudomonas aeruginosa from gut by inhibiting secreted virulence factor interactions with mucins and enriching Bacteroides population. J Biomed Sci.Rajendra Prasad Janapatla.J Biomed Sci. 2023; 30: 9.
2022 Liao-Chun Chiang, Kun-Yi Chien, Hung-Yuan Su, Yen-Chia Chen,Yan-Chiao Mao, and Wen-Guey WuComparison of Protein Variation in Protobothrops mucrosquamatus Venom between Northern and Southeast Taiwan and Association with Human Envenoming Effects.Toxins (Basel). 2022 Sep 18;14(9):643.
Ting Yee Siow , Cheng Hong Toh , Jung-Lung Hsu , Geng-Hao Liu , Shwu-Hua Lee , Ning-Hung Chen , Changjui James Fu , Mauricio Castillo , Ji-Tseng Fang. Association of Sleep, Neuropsychological Performance, and Gray Matter Volume With Glymphatic Function in Community-Dwelling Older Adults. Neurology. 2022 Feb 22;98(8):e829-e838. 
Chin-Chuen Lin,  Hung Su,  Jentaie Shiea,  and Tiao-Lai Huang. Isobaric Tags for Relative and Absolute Quantitation Identification of Blood Proteins Relevant to Paroxetine Response in Patients With Major Depressive Disorder. Front Psychiatry. 2022; 13: 577857.(致謝)
C Y Wang, M K Hsieh, Y J Hu, A Bit, P L Lai. Monocarboxylate transporter 1-mediated lactate accumulation promotes nucleus pulposus degeneration under hypoxia in a 3D multilayered nucleus pulposus degeneration model.Eur Cell Mater. 2022 Feb 21;43:53-65.
2021 Chih-Hsin Hsu,1 I-Fan Liu, Hsuan-Fu Kuo, Chia-Yang Li, Wei-Shiung Lian,  Chia-Yuan Chang, Yung-Hsiang Chen, Wei-Lun Liu, Chi-Yu Lu, Yu-Ru Liu,Tzu-Chieh Lin, Tsung-Ying Lee, Chi-Yuan Huang, Chong-Chao Hsieh, and Po-Len Liu. miR-29a-3p/THBS2 Axis Regulates PAH-Induced Cardiac Fibrosis. Int J Mol Sci. 2021 Oct; 22(19): 10574. (致謝_高長)
Pao-Jen Kuo, Cheng-Shyuan Rau, Shao-Chun Wu,3 Chia-Wei Lin,1 Lien-Hung Huang, Tsu-Hsiang Lu, Yi-Chan Wu, Chia-Jung Wu, Chia-Wen Tsai, and Ching-Hua Hsieh.Exosomes Secreted by Adipose-Derived Stem Cells Following FK506 Stimulation Reduce Autophagy of Macrophages in Spine after Nerve Crush Injury. Int J Mol Sci. 2021 Sep; 22(17): 9628.(致謝_高長)
Ming-Tse Kuo, Po-Chiung Fang, Shu-Fang Kuo, Alexander Chen, and Yu-Ting Huang. Tear Proteomics Study of Dry Eye Disease: Which Eye Do You Adopt as the Representative Eye for the Study? Int J Mol Sci. 2021 Jan; 22(1): 422. (致謝_高長)
Wei-Ling Chen, You-Lin Tain, Hung-En Chen, and Chien-Ning Hsu. Cardiovascular Disease Risk in Children With Chronic Kidney Disease: Impact of Apolipoprotein C-II and Apolipoprotein C-III.Front Pediatr. 2021; 9: 706323. (致謝_高長)
Lien-Hung Huang, Cheng-Shyuan Rau, Shao-Chun Wu, Yi-Chan Wu, Chia-Jung Wu, Chia-Wen Tsai, Chia-Wei Lin, Tsu-Hsiang Lu, Ching-Hua Hsieh, Identification and characterization of hADSC-derived exosome proteins from different isolation methods. J. Cell Mol. Med. 2021 June 21,  25: 7436-7450 (致謝_高長)
Johnson Chia-Shen Yang,Lien-Hung Huang,Shao-Chun Wu,Pao-Jen Kuo,Yi-Chan Wu,Chia-Jung Wu,Chia-Wei Lin,Pei-Yu Tsai and Ching-Hua Hsieh, Lymphaticovenous Anastomosis Supermicrosurgery Decreases Oxidative Stress and Increases Antioxidant Capacity in the Serum of Lymphedema Patients. J. Clin. Med. 2021, 6 April, 10(7), 1540 (致謝_高長)
Ken-Pen Weng, Sung-Chou Li, Kuang-Jen Chien, Kuo-Wang Tsai, Ho-Chang Kuo, Kai-Sheng Hsieh and Shih-Hui Huang. Prediction Model for Diagnosis of Kawasaki Disease Using iTRAQ-Based Analysis. Children 2021, 5 July, 8(7), 576 (高長)
Shui-Yi Tung, Ko-Chao Lee, Kam-Fai Lee, Ya-Ling Yang, Wen-Shih Huang, Li-Ya Lee, Wan-Ping Chen, Chin-Chu Chen, Chih-Chuan Teng, Chien-Heng Shen, Meng-Chiao Hsieh, Cheng-Yi Huang, Jiunn-Ming Sheen, Hsing-Chun Kuo. Apoptotic mechanisms of gastric cancer cells induced by isolated erinacine S through epigenetic histone H3 methylation of FasL and TRAIL. Food Funct. 2021 Apr 21;12(8):3455-3468. (致謝)
Cheng-Shyuan Rau, Pao-Jen Kuo, Shao-Chun Wu, Lien-Hung Huang, Tsu-Hsiang Lu, Yi-Chan Wu, Chia-Jung Wu, Chia-Wei Lin, Chia-Wen Tsai and Ching-Hua Hsieh. Enhanced Nerve Regeneration by Exosomes Secreted by Adipose-Derived Stem Cells with or without FK506 Stimulation. Int. J. Mol. Sci. 9 Aug. 2021, 22(16), 8545  (致謝_高長)
Sheng‑Yu Lee, Tzu‑Yun Wang, Ru‑B and Lu, Liang‑Jen Wang, Sung‑Chou Li, Chi‑YingTu, Cheng‑Ho Chang, Yung‑Chih Chiang & Kuo‑WangTsai. Identification of potential plasma protein biomarkers for bipolar II disorder: a preliminary/exploratory study. Scientific Reports, 9452 (2021) 11: 9452
Jei-Ming Peng, Ruo-Han Tseng, Tsung-Chieh Shih, Sen-Yung Hsieh. CAMK2N1 suppresses hepatoma growth through inhibiting E2F1-mediated cell-cycle signaling. Cancer Lett. 2021 Jan 28;497:66-76. (致謝)
Shao-Chun Wu, Pao-Jen Kuo, Cheng-Shyuan Rau, Lien-Hung Huang, Chia-Wei Lin, Yi-Chan Wu, Chia-Jung Wu, Chia-Wen Tsai, Ting-Min Hsieh, Hang-Tsung Liu, Chun-Ying Huang and Ching-Hua Hsieh. Increased Angiogenesis by Exosomes Secreted by Adipose-Derived Stem Cells upon Lipopolysaccharide Stimulation. Int. J. Mol. Sci. 2021 Aug 18, 22(16), 8877 (技術平台)
Kung-Chuan Cheng ,Hsing-Chun Kuo,Meng-Chiao Hsieh ,Cheng-Yi Huang ,Chih-Chuan Teng ,Shui-Yi Tung ,Chien-Heng Shen ,Kam-Fai Lee ,Ya-Ling Yang and Ko-Chao Lee. Identification of Two Novel CIL-102 Upregulations of ERP29 and FUMH to Inhibit the Migration and Invasiveness of Colorectal Cancer Cells by Using the Proteomic Approach. Biomolecules 2021, 11(9), 1280. (致謝_核心實驗室)
Chia-Lung Tsai , Shih-Ming Jung , Lang-Ming Chi , Chi-Neu Tsai , Chiao-Yun Lin , Angel Chao , Yun-Shien Lee. Glycogen synthase kinase-3 beta (GSK3β)-mediated phosphorylation of ETS1 promotes progression of ovarian carcinoma. Aging (Albany NY). 2021 May 31.13739–13763.(核心成員)
2020 Jei-Ming Peng , Sheng-Hsuan Lin , Ming-Chin Yu , Sen-Yung Hsieh. CLIC1 recruits PIP5K1A/C to induce cell-matrix adhesions for tumor metastasis. J Clin Invest. 2021 Jan 4;131(1):e133525. (致謝_核心實驗室)
Sung-Chou Li, Kuo-Wang Tsai, Lien-Hung Huang, Ken-Pen Weng, Kuang-Jen Chien, Yuyu Lin, Chi-Ying Tu & Pei-Hsien Lin, Serum proteins may facilitate the identification of Kawasaki disease and promote in vitro neutrophil infiltration , Scientific Reports (2020) v.10, Article number: 15645 (高長-李松洲_高榮-翁根本,方法)
Hsiao YC, Lin SY, Chien KY, Chen SF, Wu CC, Chang YT, Chi LM, Chu LJ, Chiang WF, Chien CY, Chang KP, Chang YS, Yu JS. An immuno-MALDI mass spectrometry assay for the oral cancer biomarker, matrix metalloproteinase-1, in dried saliva spot samples. Anal Chim Acta. 2020 Mar 1;1100:118-130. (核心成員)
2019 Chi LM, Hsiao YC, Chien KY, Chen SF, Chuang YN, Lin SY, Wang WS, Chang IY, Yang C, Chu LJ, Chiang WF, Chien CY, Chang YS, Chang KP, Yu JS. Assessment of candidate biomarkers in paired saliva and plasma samples from oral cancer patients by targeted mass spectrometry. J Proteomics. 2020 Jan 16;211:103571. (核心成員)
2018 Tang WF, Huang RT, Chien KY, Tang P, Horng JT. Large-Scale Proteomic Identification of Targets of Cellular miR-197 Downregulated by Enterovirus A71.J Proteome Res. 2019 Jan 4;18(1):449-460.
Chien-Ning Hsu, Yu-Ju Lin, You-Lin Tain, Postnatal high-fat diet sex-specifically exacerbates prenatal dexamethasone-induced hypertension: Mass spectrometry-based quantitative proteomic approach, The Journal of Nutritional Biochemistry, V.57, July 2018, Pages 268-275 (高長-田祐霖, 致謝)
Hsu CL, Lui KW, Chi LM, Kuo YC, Chao YK, Yeh CN, Lee LY, Huang Y, Lin TL, Huang MY, Lai YR, Yeh YM, Fan HC, Lin AC, Lu YJ, Hsieh CH, Chang KP, Tsang NM, Wang HM, Chang AY, Chang YS, Li HP. Integrated genomic analyses in PDX model reveal a cyclin-dependent kinase inhibitor Palbociclib as a novel candidate drug for nasopharyngeal carcinoma. J Exp Clin Cancer Res. 2018 Sep 20;37(1):233.
ang TY, Chi LM, Chien KY. Size-exclusion chromatography using reverse-phase columns for protein separation. J Chromatogr A. 2018 Oct 12;1571:201-212.
Hsiao YC, Chu LJ, Chen YT, Chi LM, Chien KY, Chiang WF, Chang YT, Chen SF, Wang WS, Chuang YN, Lin SY, Chien CY, Chang KP, Chang YS, Yu JS. Variability Assessment of 90 Salivary Proteins in Intraday and Interday Samples from Healthy Donors by Multiple Reaction Monitoring - Mass Spectrometry. Proteomics Clin Appl. 2018 Mar;12(2).
Tsai CY, Chi HC, Chi LM, Yang HY, Tsai MM, Lee KF, Huang HW, Chou LF, Cheng AJ, Yang CW, Wang CS, Lin KH. Argininosuccinate synthetase 1 contributes to gastric cancer invasion and progression by modulating autophagy. FASEB J. 2018 May;32(5):2601-2614
2017 Chuang CF, King CE, Ho BW, Chien KY, Chang YC. Unbiased Proteomic Study of the Axons of Cultured Rat Cortical Neurons. J Proteome Res. 2018 May 4;17(5):1953-1966
Hsiao YC, Chi LM, Chien KY, Chiang WF, Chen SF, Chuang YN, Lin SY, Wu CC, Chang YT, Chu LJ, Chen YT, Chia SL, Chien CY, Chang KP, Chang YS, Yu JS. Development of a Multiplexed Assay for Oral Cancer Candidate Biomarkers Using Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry. Mol Cell Proteomics. 2017 Oct;16(10):1829-1849.
Tsai HJ, Chien KY, Liao HR, Shih MS, Lin YC, Chang YW, Cheng JC, Tseng CP. Functional links between Disabled-2 Ser723 phosphorylation and thrombin signaling in human platelets. J Thromb Haemost. 2017 Oct;15(10):2029-2044
Chiu CC, Yeh TH, Lu CS, Huang YC, Cheng YC, Huang YZ, Weng YH, Liu YC, Lai SC, Chen YL, Chen YJ, Chen CL, Chen HY, Lin YW, Wang HL , PARK14 PLA2G6 mutants are defective in preventing rotenone-induced mitochondrial dysfunction, ROS generation and activation of mitochondrial apoptotic pathway Oncotarget. 2017 Sep 15;8(45):79046-79060
Chen TW, Gan RC, Fang YK, Chien KY, Liao WC, Chen CC, Wu TH, Chang IY, Yang C, Huang PJ, Yeh YM, Chiu CH, Huang TW, Tang P. FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation. Sci Rep. 2017 Sep 5;7(1):10430.
Hsieh YJ, Chien KY, Yang IF, Lee IN, Wu CC, Huang TY, Yu JS. Oxidation of protein-bound methionine in Photofrin-photodynamic therapy-treated human tumor cells explored by methionine-containing peptide enrichment and quantitative proteomics approach. Sci Rep. 2017 May 2;7(1):1370.
2016 Kung YA, Hung CT, Chien KY, Shih SR. Control of the negative IRES trans-acting factor KHSRP by ubiquitination. Nucleic Acids Res. 2017 Jan 9;45(1):271-287.
Wang TH, Yu CC, Lin YS, Chen TC, Yeh CT, Liang KH, Shieh TM, Chen CY, Hsueh C. Long noncoding RNA CPS1-IT1 suppresses the metastasis of hepatocellular carcinoma by regulating HIF-1α activity and inhibiting epithelial-mesenchymal transition. Oncotarget. 2016 Jul 12;7(28)
Cheng ML, Chi LM, Wu PR, Ho HY. Dehydroepiandrosterone-induced changes in mitochondrial proteins contribute to phenotypic alterations in hepatoma cells. Biochem Pharmacol. 2016 Oct 1;117:20-34.
Chen YC, Chi LM, Chow KC, Chiou SH, Fan YH, Ho SP Hsu YC, Hwang YC, Wu MX, Lee WM, Lin SL, Tsang CL, Mao FC. Association of anticardiolipin, antiphosphatidylserine, anti-β2 glycoprotein I, and antiphosphatidylcholine autoantibodies with canine immune thrombocytopenia. BMC Vet Res. 2016 Jun 13;12(1):106.
Hsieh SY, Lee CH, Lin CC. Platelet: A friend or foe of patients with hepatoma? Liver Int. 2016 Apr;36(4):615.
Chiu CY, Lin G, Cheng ML, Chiang MH, Tsai MH,Lai SH,Wong KS, Hsieh SY.Metabolomic Profiling of Infectious Parapneumonic Effusions Reveals Biomarkers for Guiding Management of Children with Streptococcus pneumoniae Pneumonia. Sci Rep. 2016 Apr 22;6:24930.
2015 Cheng HT, Hsieh SY, Sung CM, Pai BC, Liu NJ, Chen CP. Optimizing Human Bile Preparation for Two-Dimensional Gel Electrophoresis. Biomed Res Int. 2016 Feb 4.
Chern-Horng Lee, Yu-Jr Lin, Chen-Chun Lin, Cho-Li Yen, Chien-Heng Shen,Chee-Jen Chang and Sen-Yung Hsieh. Pretreatment platelet count early predicts extrahepatic metastasis of human hepatoma. Liver international,. 2015 Oct;35(10):2327-36.
Chiu CY, Hsieh SY, Wong KS, Lai SH, Chen JK, Huang JL. The value of total protein in guiding management of infectious parapneumonic effusion by using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Microbiol Immunol Infect. 2015 Oct;48(5):483-9.
Chang KP, Lin SJ, Liu SC, Yi JS, Chien KY, Chi LM, Kao HK, Liang Y, Lin YT, Chang YS, Yu JS. Low-molecular-mass secretome profiling identifies HMGA2 and MIF as prognostic biomarkers for oral cavity squamous cell carcinoma. Sci Rep. 2015 Jul 3;5:11689.
Lin CS, Su CC, Hsieh SC, Lu CC, Wu TL, Jia JH, Wu TS, Han CC, Tsai WC, Lu JJ, Lai HC. Rapid identification of Mycobacterium avium clinical isolates by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J Microbiol Immunol Infect. 2015 Apr;48(2)
Chung PJ, Chi LM, Chen CL, Liang CL, Lin CT, Chang YX, Chen CH, Chang YS. MicroRNA-205 targets tight junction-related proteins during urothelial cellular differentiation. Mol Cell Proteomics. 2014 Sep;13(9):2321-36.
2014 Fang KH, Kao HK, Chi LM, Liang Y, Liu SC, Hseuh C, Liao CT, Yen TC, Yu JS, Chang KP. Overexpression of BST2 is associated with nodal metastasis and poorer prognosis in oral cavity cancer. Laryngoscope. 2014 Sep;124(9):E354-60.
Chih-Yung Chiu, Sen-Yung Hsieh, Kin-Sun Wong, Shen-Hao Lai, Jen-Kun Chen, Jing-Long Huang. The value of total protein in guiding management of infectious parapneumonic effusion by using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Journal of Microbiology, Immunology and Infection. 2014 Feb 21.
2013 Rabindranath Bera, Chih-Yung Chiou, Ming-Chin Yu, Jei-Ming Peng, Chung-Ru He, Chih-Yun Hsu, Hsiao-Ling Huang, Uda Y. Ho, Shi-Ming Lin, Yu-Jr Lin, and Sen-Yung Hsieh. Functional genomics identified a novel protein tyrosine phosphatase receptor type F-mediated growth inhibition in hepatocarcinogenesis.. Hepatology. 2014 Jun;59(6):2238-50.
Ying-Che Chang ,  Hong-Wen Tang ,  Suh-Yuen Liang ,  Tsung-Hsien Pu ,  Tzu-Ching Meng ,  Kay-Hooi Khoo , and Guang-Chao Chen . Evaluation of Drosophila Metabolic Labeling Strategies for in Vivo Quantitative Proteomic Analyses with Applications to Early Pupa Formation and Amino Acid Starvation. Journal of Proteome. 2013 12(5): pp 2138–2150.
Chang KP, Wang CL, Kao HK, Liang Y, Liu SC, Huang LL, Hseuh C, Hsieh YJ, Chien KY, Chang YS, Yu JS, Chi LM*. Overexpression of caldesmon is associated with lymph node metastasis and poorer prognosis in patients with oral cavity squamous cell carcinoma. Cancer. 2013 Nov 15;119(22):4003-11. 
Lo SJ, Fan LC, Tasi YF, Lin KY Huang HL, Wang TH, Liu H, Chen TC, Huang SF, Chang CJ, Lin YJ, Yung BY, Hsieh SY. A novel interaction of nucleophosmin with BCL2-associated X protein regulating death evasion and drug sensitivity in human hepatoma cells. Hepatology. 2013 May;57(5):1893-905
Lee Chern-Horng, Hsieh Sen-Yung, Lin Ja-Liang, Liu Maw-Sen and Yen Tzung-Hai. Hepatocellular carcinoma in patients with chronic kidney disease. World J Gastroenterol. 2013 April 28;19(16): 2466-2472.
Yuan Kuo-Ching, Fang Jen-Feng, Hsieh Sen-Yung, Shih Hsin-Nung. Comparative Proteomic Analysis of Rodent Plasma and Mesenteric Lymph. Chinese Journal of Physiology. Erratum in: Chin J Physiol. 2013 Jun 30;56(3):163-73.
Lee CH, Hsieh SY, Chang CJ, Lin YJ. Comparison of clincal characteristics of combined hepatocellular-cholangiocarcinoma and other primary liver cancers. J Gastroenterol Hepatol. 2013 Jan;28(1):122-7
Chen JT, Ho CW, Chi LM, Chien KY, Hsieh YJ, Lin SJ, Yu JS. Identification of the lamin A/C phosphoepitope recognized by the antibody P-STM in mitotic HeLa S3 cells. BMC Biochem. 2013 Jul 19;14:18.
2012 Lin SJ, Chang KP, Hsu CW, Chi LM, Chien KY, Liang Y, Tsai MH, Lin YT, Yu JS. Low-molecular-mass secretome profiling identifies C-C motif chemokine 5 as a potential plasma biomarker and therapeutic target for nasopharyngeal carcinoma. J Proteomics. 2013 Dec 6;94:186-201.
Shih Tsung-Chieh, Tien Yin-Jing, Wen Chih-Jen, Yeh Ta-Sen, Yu Ming-Chin, Huang Chia-Hao, Lee Yun-Shien , Yen Tzu-Chen, Hsieh Sen-Yung. MicroRNA-214 downregulation contributes to tumor angiogenesis by inducing secretion of the hepatoma-derived growth factor in human hepatoma. Journal of Hepatology. 2012 Sep;57(3): 584–591
Chen, CPC (Chen, Carl P. C.); Chen RL; Preston JE. The influence of ageing in the cerebrospinal fluid concentrations of proteins that are derived from the choroid plexus, brain, and plasma. Exp Gerontol. 2012 Apr;47(4):323-8
Hsieh Y-J, Chien K-Y, Lin S-Y, Sabu S, Hsu R-M, Chi L-M, Lyu P-C, and Yu J-S*. Photofrin binds to procaspase-3 and mediates photodynamic treatment–triggered methionine oxidation and inactivation of procaspase-3. Cell Death & Disease 2012 July 12, 3: e347
2011 Chen CY, Chi LM, Chi HC, Tsai MM, Tsai CY, Tseng YH, Lin YH, Chen WJ, Huang YH, Lin KH. Stable isotope labeling with amino acids in cell culture (SILAC)-based quantitative proteomics study of a thyroid hormone-regulated secretome in human hepatoma cells. Molecular & Cellular Proteomics. 2012 Apr;11(4):M111.0112
Hsieh Sen-Yung; He Jung-Ru; Yu Ming-Chin; et al. Secreted ERBB3 Isoforms Are Serum Markers for Early Hepatoma in Patients with Chronic Hepatitis and Cirrhosis. J. Proteome Research, 2011, 10(10)4715-4724
Chen R, Vendrell I, Chen CP (陳伯旭), Cash D, O'Toole KG, Williams SA, Jones C, Preston JE, Wheeler JX. Proteomic analysis of rat plasma following transient focal cerebral ischemia. Biomark Med. 2011 Dec;5(6):837-46.
Chen CP, Hsu CC, Yeh WL, Lin HC, Hsieh SY, Lin SC, Chen TT, Chen MJ, Tang SF. Optimizing Human Synovial Fluid Preparation for Two-Dimensional Gel Electrophoresis. PROTEOME SCIENCE, 2011, :9 ( 65 )-p.5956-9-65
Hsieh Sen-Yung; He Jung-Ru; Hsu Chih-Yun; et al. Neuregulin/Erythroblastic Leukemia Viral Oncogene Homo log 3 Autocrine Loop Contributes to Invasion and Early Recurrence of Human Hepatoma. HEPATOLOGY 2011,:53(2) p.504-516.
Chang KP, Yu JS, Chien KY, Lee CW, Liang Y, Liao CT, Yen TC, Lee LY, Huang LL, Liu SC, Chang YS, Chi LM*. Identification of PRDX4 and P4HA2 as Metastasis-Associated Proteins in Oral Cavity Squamous Cell Carcinoma by Comparative Tissue Proteomics of Microdissected Specimens Using iTRAQ Technology. Journal of Proteome Research, 2011 Nov 4;10(11):4935-47. 
Huang YC,Wu YR,Tseng MY,Chen YC,Hsieh SY,Chen CM. Increased Prothrombin, Apolipoprotein A-IV, and Haptoglobin in the Cerebrospinal Fluid of Patients with Huntington's Disease. PLOS ONE 2011 Jan 31;6(1):e15809.
2010 Wang CN, Chen JY, Sabu S, Chang YL, Chang SD, Kao CC, Peng HH, Chueh HY, Chao AS, Cheng PJ, Lee YS*, Chi LM*, Wang TH*. Elevated amniotic fluid F₂-isoprostane: a potential predictive marker for preeclampsia. Free Radical Biology and Medicine 2011 May 1;50(9):1124-30.
Fang JF, Shih LY, Yuan KC, Fang KY, Hwang TL, Hsieh SY. Proteomic Analysis of Post-hemorrhagic Shock Mesenteric Lymph. Shock. 2010 Sep;34(3):291-298. (3.871)
Wang TH, Chao A, Tsai CL, Chang CL, Chen SH, Lee YS, Chen JK, Lin YJ, ChangPY, Wang CJ, Chao AS, Chang SD, Chang TC, Lai CH, Wang HS. Stress-inducedphosphoprotein 1 as a secreted biomarker for human ovarian cancer promotes cancercell proliferation. Mol Cell Proteomics. Mol Cell Proteomics. 2010 Sep;9(9):1873-84.(10.84)
Hsieh SY, Huang SF, Yu MC, Yeh TS, Chen TC, Lin YJ, Chang CJ, Sung CM, Lee YL,Hsu CY. Stathmin1 overexpression associated with polyploidy, tumor-cell invasion,early recurrence, and poor prognosis in human hepatoma. Mol Carcinog. 2010May;49(5):476-87.(3.202)
2009 Chiung-Yin Huang, Jyh-Wei Shin,Pin-Yuan Chen,Li-Ying Feng, Tai-Wei Erich Wu, Chia-Wen Huang, Shih-Ming Jung, Ngan-Ming Tsang, Chen-Kan Tseng, Ping-ChingPaiand Kuo-Chen Wei. DJ-1 expression in glioblastoma-adjacent tissues is a good prognostic indicator of survival. InterationJounal of Cancer 2010 (4.23).
Lu Chang-Yi; Hsieh Sen-Yung; Lu Yen-Jung; et al. Aberrant DNA Methylation Profile and Frequent Methylation of KLK10 and OXGR1 Genes in Hepatocellular Carcinoma. 2009, GENES CHROMOSOMES & CANCER  Volume: 48(12)p.1057-1068
Tsai, Ming-Han;Lin, Tzou-Yien; Hsieh, Sen-Yung; Chiu, Chih-Yung;Chiu, Cheng-Hsun; Huang, Yhu-Chering. Comparative proteomic studies of plasma from children with pneumococcal pneumonia.Scandinavia. Journal of Infectious Diseases, 2009 Volume 41( 6-7)416-24.(1.700)
Chi LM, Lee CW, Chang KP, Hao SP, Lee HM, Liang Y, Hsueh C, Yu CJ, Lee IN, Chang YJ, Lee SY, Yeh YM, Chang YS, Chien KY*, Yu JS*. Enhanced interferon signaling pathway in oral cancer revealed by quantitative proteome analysis of microdissected specimens using 16O/18O labeling and integrated 2DLC-ESI-MALDI tandem MS. Molecular & Cellular Proteomics, 2009, 8(7):1453-74.
Ming-Han Tsai, Tzou-Yien Lin, Sen-Yung Hsieh, Chih-Yung Chiu, Cheng-Hsun Chiu & Yhu-Chering Huang. Comparative proteomic stud of plasma from children with pneumococcal pneumonia. Scandinavian journal of infectious. Scand J Infect Dis. 2009;41(6-7):416-24.(1.700)
Hsieh SY, Hsu CY, He JR, Liu CL, Lo SJ, Chen YC, Huang HY. Identifying apoptosis-evasion proteins/pathways in human hepatoma cells via induction of cellular hormesis by UV irradiation. J Proteome Res. 2009 Aug;8(8):3977-86. (5.132)
Lee CH, Hsieh SY. Viral associated intrahepatic cholangiocarcinoma shares common disease processes with hepatocellular carcinoma. Br J Cancer 2009 Jun 2;100(11):1765-70. Epub 2009 May 12.(4.346)
Tzu-Hao Wang, An-Shine Chao, Jen-Kun Chen, Angel Chao, Yao-Lung Chang, Po-Jen Cheng, Shuenn-Dyh Chang,and Hsin-Shih Wang.Network analyses of differentially expressed proteinsin amniotic fluid supernatant associated withabnormal human karyotypes. FertilSteril. 2009Jul;92(1):96-107.(3.970)
2008 Lee LC, Chen CM, Chen FL, Lin PY, Hsiao YC, Wang PR, Su MT, Hsieh-Li HM, Hwang JC, Wu CH, Lee GC, Singh S, Lin Y, Hsieh SY, Lee-Chen GJ, Lin JY. Altered expression of HSPA5, HSPA8 and PARK7 inspinocerebellar ataxia type 17 identified by 2-dimensional fluorescence difference in gel electrophoresis.ClinicaChimicaActa 2009 Feb;400(1-2):56-62
Shih TC, Hsieh SY, Hsieh YY, Chen TC, Yeh CY, Lin CJ, Lin DY, Chiu CT.Aberrant activation of nuclear factor of activated T cell 2 in lamina propriamononuclear cells in ulcerative colitis. World J Gastroenterol. 2008 Mar21;14(11):1759-67.
Lin WR, Lin DY, Tai DI, Hsieh SY, Lin CY, Sheen IS, Chiu CT. Prevalence ofand risk factors for gallbladder polyps detected by ultrasonography among healthyChinese: analysis of 34 669 cases. J GastroenterolHepatol. 2008 Jun;23(6):965-9.
Wang TH, Chao AS, Chen JK, Chao A, Chang YL, Cheng PJ, Chang SD, Wang HS.Network analyses of differentially expressed proteins in amniotic fluid supernatant associated with abnormal human karyotypes. FertilSteril. 2008 Dec 22. [Epub ahead of print](3.970)
Chiu CY, WongKS, Huang JL, Tasi MH, Lin TY, Hsieh SY.Proinflammatory cytokines, fibrinolytic system enzymes, and biochemical indices in children with infectious para-pneumonic effusions.Pediatrics Infect Dis J. 2008 Aug;27(8):699-703.(3.312)
Hsieh SY, Zhang FH, Chen JK, Lee YL. Profiling the proteome dynamics during cell cycle progression. Proteomics 2008: 8(14):2872-84(3.851)
Shih TC, Hsieh SY*. Pathogenic proteomics revealed specific activation and nuclear translocation of NFAT2 in the infiltrative lymphocytes in human ulcerative colitis. 2008 World J Gastroenterology 2008 Mar 21;14(11):1759-67(2.092)
2007 Hsieh SY, Tseng CL, Lee YL, Kuo AJ, Sun CF, Chen JK. Highly efficient classification and identification of human pathogenic bacteria by MALDI-TOF MS. Mol Cellular Proteomics 2008 Feb;7(2):448-56. Epub 2007 Nov 27. (10.84)
Liu EH, Chen MF, Yeh TS, Ho YP, Wu RC, Chen TC, Jan YY, Pan TL. A useful model to audit liver resolution from cirrhosis in rats using functional proteomics. J Surg Res. 2007 Apr;138(2):214-23. Epub 2007 Feb 9.
2006 Chang KH, Lyu RK, Tseng MY, Ro LS, Wu YR, Chang HS, Hsu WC, Hsieh SY, Chen CM. Elevated haptoglobin level of cerebrospinal fluid in Guillain-Barré syndrome revealed by proteomics analysis. Proteomics Clinical Application 2007 May 3;1(5):467-475.
Yi-Shin Pan, Yun-Shien Lee, Yung-Lin Lee, Wei-Chen Lee and, Sen-Yung Hsieh. Differentially profiling the low-expression transcriptomes of human hepatoma using a novel SSH/microarray approach. BMC GENOMICS  Volume: 7 (131)   DOI: 10.1186/1471-2164-7-131  Published: MAY 31 2006
Hsieh SY, Shih TC, Yeh CY, Lin CJ, Chou YY, Lee YS. Comparative proteomics of human ulcerative colitis. Proteomics 2006 6(19):5322-31. (3.851)
2005 Hsieh SY, Chen RK, Pan YH, Lee HL.Systematical evaluation of the effects of sample collection procedures on low-molecular-weight serum/plasma proteome profiling. Proteomics. 2006 May;6(10):3189-98. (3.851)
Hsieh SY, Chen WY, Shih TC, Yeh JY, Jeng JT. Dys-regulation of clusterin inhuman hepatoma is not associated with tumorigenesis but is secondary to cellresponse to external tresses. Mol Carcinog. 2005 Jun;43(2):100-7
Wang TH, Chang YL, Peng HH, Wang ST, Lu HW, Teng SH, ChangSD, Wang HS. Rapid detection of fetal aneuploidy using proteomics approaches on amniotic fluid supernatant.PrenatDiagn. 2005 Jul;25(7):559-66.
Hsieh SY, Chen WY, Yeh TS, Sheen IS, Huang SF. High-frequency Alu-mediatedgenomic recombination/deletion within the caspase-activated DNase gene in humanhepatoma. Oncogene. 2005 Sep 29;24(43):6584-9.
Ketterlinus R, Hsieh SY, Teng SH, Lee H, Pusch W.Fishing for biomarkers: analyzing mass spectrometry data with the new ClinProTools software.Biotechniques. 2005; 38: 37-40.